NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247794_10000432

Scaffold Ga0247794_10000432


Overview

Basic Information
Taxon OID3300024055 Open in IMG/M
Scaffold IDGa0247794_10000432 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7021
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000288Metagenome / Metatranscriptome1369Y
F034562Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0247794_100004323F034562N/AMTLCLVGLALVSGCGSSAPTPGPADRSIEQDLLRGVREIRTTHDRETLRVELVHLLAHLRRLHGTTETARRGRELALQGFEATLEGTQSQLDFVENDSGEVAAATRDAKRADHYLRRGANRLRAAGQVFGIQIGELNGY
Ga0247794_100004324F000288AGGAGGMALARVVTFDGVSSDRVAQMQRDMQGEEQPEGLNATEIVVLHDPDAERSLVILFFGNEDDYRAGDEILNAMPAGDTPGRRSDVAKYQVAYRMTQ
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