Scaffold Ga0209987_10163122

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209987_10163122

Scaffold Ga0209987_10163122

Overview

Basic Information
Taxon OID	3300024060 Open in IMG/M
Scaffold ID	Ga0209987_10163122 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1278
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kermadec Trench
Coordinates	Lat. (^o)	-34.3456	Long. (^o)	-178.1771	Alt. (m)		Depth (m)	8081
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028812	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209987_101631221	F028812	N/A	GCVLIAPMDLDLENVIRQALGVAKAAGKDDMGRTILAVQAVQRARPDMTAADALAAVNLVQRS

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