NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247694_1000015

Scaffold Ga0247694_1000015


Overview

Basic Information
Taxon OID3300024178 Open in IMG/M
Scaffold IDGa0247694_1000015 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105481
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (87.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000753Metagenome / Metatranscriptome906Y
F006362Metagenome / Metatranscriptome375Y
F012473Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0247694_100001512F012473GGAMIGYYDLVVAATALERGGQLATFNTGHFSRIKGLSVVKPA
Ga0247694_100001569F006362AGCAGGMAAVASSSAILPILGFPAGVDVYWETQRRVVWNEQERTREEHELVYEISWIKEIGLWRCFLRSQHKVND
Ga0247694_100001570F000753GGAGMITVKARQKLFTHSEVTNLTGICAEHLENLAKRHRLGFIARATETEGNQTDQWFFSPWDLMVLATLFPRCAH
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