NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247694_1000140

Scaffold Ga0247694_1000140


Overview

Basic Information
Taxon OID3300024178 Open in IMG/M
Scaffold IDGa0247694_1000140 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22217
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F011861Metagenome / Metatranscriptome286Y
F053586Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247694_100014015F053586AGAAGGMERIYDRLERIRQLWKKLEVTKPNTNEYAAIMNQIRVLSEEYRALIEAPKKLKE
Ga0247694_100014017F000173GGAGGMKTFEVQFRYRDRKEETIQSAVKVEASNLPGAVGKAAREFVKGLDRKQRFDMNKNGLEITAKPVATATEAPEKTSAEAAAN
Ga0247694_10001409F011861AGGAMARFQYSVTTKASPALAWLVFSDLHRWNNFANVYGELRWRDGNPWEPGSRLQIELLRPVNAVIDHVITTCVPGKKVGWIDHALGVAMAQWVTFEDRPMEGTRVHTWGEVIHSGITIGGRTVEELIASFTRTWYESFRIACNQLVLPGGAGPGEASFATQ
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