NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1001058

Scaffold Ga0228668_1001058


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1001058 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9672
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022760Metagenome / Metatranscriptome213Y
F026719Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0228668_100105810F022760AGGMKIEIITNNHISMLERFCSKAKELKYINNSSLKAMKYEWCKEQGEYFCAIVNNEIVAVAGCHPLPEVGPNAWRIMFRGCELPHNDNFKGLGKGDWNSITQREMIPKFIEWCPSNELYLTTNIDHEHSNGKASRNHRLMGLLAKQGILSKHADMELYYTQQTVWKLNIHEYTKRRNRLRGNYVVQS
Ga0228668_10010587F026719AGAAGMEPYYKLIPYMISDNTKEQLLEIAYAPEAFVDISYKISFFKLPSTIQKFNTTGLNCVCQMLRVTESGSKIHKDKNRYNEYENLYMPRQTVISFPLTNNGGKTHFYDDDENFVCDINYDNQGAILNTGGYNHNVHFTEDNNTRLVFQLCFEEAFEDVCNIYENKLKGMIL
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