NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1000007

Scaffold Ga0247669_1000007


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1000007 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)290801
Total Scaffold Genes273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)211 (77.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002848Metagenome / Metatranscriptome526Y
F011416Metagenome / Metatranscriptome291Y
F024595Metagenome / Metatranscriptome205Y
F033122Metagenome / Metatranscriptome178Y
F050739Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0247669_1000007189F011416AGGTGGMNFTKKITWQLILAAVGVSLFVVSAARAQEITNTDFETPATSVSGNFNNPSAAAANTAVNNAQADYAAVSEASILQANQQEEVSMASFPRTLGSLIAIGVLLIACGMLWKSAGQRQNDTLKTHNALSTRKHPLPSRKAQALNS
Ga0247669_1000007211F002848GAGGMRKQLWILSCAMLAIPVLCAGQNPQPKPVSKKSSSSTAKSATTTPKPANPSTKIVYAELTIGELIAEDANRWSDKMSAHAAVSGFVTQVAKGPDGDTDVRICENPKIEGMDRTRCIVAKCISRLPCDLPPVGRPITVKGITRYDAKVGTHWWEIHPVEETEK
Ga0247669_1000007232F033122GGAGGMTHSETQTLTQTGVVEVSGWDENQVFFVERSELGWDEYAGKHVTLTRMLSESSIVFVRPIQPTALHRPNPIPYEAEFVGCSPEGHHQFRLNEVLPRHNRENFTVN
Ga0247669_100000736F024595N/AMAAKIIRCTGRRSCLVRWCSATAILAVLALGCAIRLRSDTRALLLPQLKPGQTLLYEIHGRLNRSVKTESRVSSFSGPQKLQGDLSSQIRLSVQRVLAGKPHPRATVQTELLPGPPAQANAPAAPPQKLTFDILAKGQLGNIKGLDDLSPEQRLLWQFWVARFAFGWILPPSRLKPGDKWKFEESELNDSLIAGLVWERETTYARDDQCPVLPAETCAVFLTQSTLKQKSSSKDSTPESYRLHELKTLGSAKGQNQAITYISQKTGLVLRANEDIQQSMDVTVMKSDGTNGVHYAVEATSHLETLLVPQLNP
Ga0247669_10000074F050739AGGAGMASPAMSEKFRAVVCRHCGKPIRVPGLITKKEREFQGLTDSGDMHYHLISRVFNVRCRSCERESVYSINQIVDYPYPLPSSATDPKAAAL
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