NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1000008

Scaffold Ga0247669_1000008


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1000008 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)278367
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)204 (82.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F034660Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0247669_1000008179F002013AGGAMEKAHLYEALFLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSIINLQFMLEMRKLEEDDESRFEEEFNVWLSDEPLTNEEICRLMRGVERERKLEGKPPLVQFLARSKRLKKIPKKNQGHASRKVNGSPTSDSGVKSTEPGGGACLRRESLRSRLLGTRP
Ga0247669_100000866F034660AGGAGGMFEVPVDKQEAKSKYERIGISVLVILVIAGAVFYFLPKQSAKPSGPVAAAPAAPADPVHDLKILRVTMNKDPLGTTAVWLVTLQNKSAAYTYTNVHYETNYIGADNRSILVNQGSIPESFGPGEEHSSQVRDTLYPNGTAWYKFKIVDAKASTM

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