Basic Information | |
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Taxon OID | 3300024182 Open in IMG/M |
Scaffold ID | Ga0247669_1000017 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 161539 |
Total Scaffold Genes | 141 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 115 (81.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000063 | Metagenome / Metatranscriptome | 2803 | Y |
F062085 | Metagenome / Metatranscriptome | 131 | Y |
F074441 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247669_100001767 | F000063 | GGAG | MLDHGVWAEVRVGDEHLRLFSEHNAQGVQASVYNVTAKNWIAPSEPVDDIEQGKDRAAAHARAYLHNAGHLELPPLEWKKSRSA |
Ga0247669_100001768 | F074441 | N/A | MTNREALMRLSADKNDRMAMTSLHDNNAHIIRTTVGRYFGAGTIADNAEFALMQRLVDHARLYEDSEDPEAWLARCTNTECDRLRNEAVHDKANRD |
Ga0247669_100001769 | F062085 | GGA | MERLQEFQTIAREGGFVVVEGSEEGTVLWLKKKTAEAEDRICLDSLTNSATVYWATIPWKINSKTFREASEMRAWVLARQVVLVS |
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