NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1000080

Scaffold Ga0247669_1000080


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1000080 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50948
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (88.10%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028009Metagenome / Metatranscriptome193Y
F032415Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0247669_100008019F028009GGAGMYRQESDNLQTFLTGEGQLLELISEGAPLPEVLDRVCTALDVQVGNVVSLVLFADDAEHALHTIEQSALKFGLTAFSCTPILSPSGELFGTLEIYCCVPRKPTLSESGLIERAAHFAAVAIQHYNHDVQAESCSLNWDGATRGSPHEWPPSSN
Ga0247669_100008028F032415GGAGVKKEIQTAMAKYWQGRGDAFPVKPAAFAAGLVLFSVLWLAISCNNLNNATQEVQPKDLCKCVPLEQGLEYRHVEKHVPIPTMTPSEITIDTIYSWAQTDPGSLDPPRTGVELQVFHLSTAFLQAVSVNSEDCDVAFEISQTADKNARRVIVETPVDTEFCSARKTIQAQLLQHGFQLDVEHGGELPQALPADVVGLGFEDFDHAAIGLQRGSAQVQTVWELHPATVQLLP
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