NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228603_1000047

Scaffold Ga0228603_1000047


Overview

Basic Information
Taxon OID3300024183 Open in IMG/M
Scaffold IDGa0228603_1000047 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13108
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F015096Metagenome / Metatranscriptome257Y
F045763Metagenome / Metatranscriptome152Y
F085719Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0228603_100004714F015096AGGAGVRLYINHKDEDNMNTLTQWQARRKELEDKYVELMLAKYPLLTDVTTNTQRKNGTRTFQLSHKKYGLCKFATYKSGMVRKIIRSRFNDLSCYQLNPQRQTTSYYMTLSDNSELNVRSCTGTQRVKITNGLTRLVYLEKYLIKNYDLDSVQDVIEVDGVLYKRI
Ga0228603_10000473F085719N/AMTKTYRNIEYTYILSETWNGIKYDNYHCNDRNLLDGLETSMFTKLSEQDMQDEIDHLIDQRQDLLQIQDLVHEARRDWYSNTYSGEYTGD
Ga0228603_10000475F045763N/AMSLFYWSEETISYFKFISSYLSKKQTIRKIELFVEMDCIPAEEETEDMLVQDLINVIYK
Ga0228603_10000478F001217N/AMSKTKFNGFEKYFIQTALNHSIKQAEEDVKELISEGKRPLYSEGYFTMVGNEILDKVNSMTLKKYQD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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