NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228669_1026327

Scaffold Ga0228669_1026327


Overview

Basic Information
Taxon OID3300024185 Open in IMG/M
Scaffold IDGa0228669_1026327 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 84D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1310
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099114Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0228669_10263271F099114N/AQNIIQSFVSSDYSVLAGDTTDISQSALKDFKIAFQEYYSGALQGSAVSGNTFDSWNSSPKYIEWADLSGSTKDYYNWSIEDASAETDKEFLNGFEQEAEWFNLSKSNNFLKVRSTQKYQASWIMRGGLTDTYKIYLKTLDSTFTNILSTTMTAANTAGLYTLDVGASEIASHSWGTTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCENTYTDYELHWLNRKGGYDSFTFSGKSNQTTSINKNFAKYNTRTIGASSITHNTYAQRKRAFHTSLSDNYTLNSRLLKDFEVEGLEDLFSSPEVYWKYDANFVSVNVTGNTFEHAKSENGQVYSMELQMEVDNSDKRQW
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