NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247672_1056811

Scaffold Ga0247672_1056811


Overview

Basic Information
Taxon OID3300024187 Open in IMG/M
Scaffold IDGa0247672_1056811 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)655
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004205Metagenome / Metatranscriptome448Y
F006201Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0247672_10568111F004205GGAGGMEAGITLQSQSFRLRERMQEASISHGQEIRADLPNIRVVALAGGGQGQALFCTMGPIRVRETLNRGDGGPLPTDVTLEGLRVASPGTYDILNALVSSNGNLR
Ga0247672_10568112F006201N/AALLTTAFEALGPERVTRGLKARGHSWSDCFFAFAISGEPDSFARELRKRWRKEHAVSTLLGVRVQTVTHVVSAWDHDEAAFRALAAEWLELNRVTRRTESIVGA
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Institute for Fundamental Biomedical Research
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