NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228602_1000200

Scaffold Ga0228602_1000200


Overview

Basic Information
Taxon OID3300024188 Open in IMG/M
Scaffold IDGa0228602_1000200 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 2D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3856
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023826Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0228602_10002004F023826GGAGMQLVTLLINLHKMSWGLFKRNILRKTNPNYNTLDVNKVAKIWADEYDAAAKRGRDLLNQESINRGNKQIMETLFRVALLKGLATPPGQNFSLVNEFGNGVKAYWAGAQMNPFPIPLIPAPGTIQNIAVNSNIVSNVGTWPMYPPIRPAQRQEIMVNMFVLAAIVHLFSIGGFIQTTSLYPSAPSPIPAPAVIAWTAYLIPPAIPIPNINFPSADGSEPAIIQQPDDEPISQLGPTQEYEEEELEQTDILSGDTSLQNVIDTTIPEDVLDDELENILPDFISQLEMGGTKCE
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