NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228637_1004652

Scaffold Ga0228637_1004652


Overview

Basic Information
Taxon OID3300024192 Open in IMG/M
Scaffold IDGa0228637_1004652 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 47D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3007
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium TMED149(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0228637_10046522F070064GGAGGMGRVKSDMLEDDLGPDDELVPTPISQVVDNIRNCDLPRNSVQRHEYLKTQLKELMDGIKTHLD
Ga0228637_10046526F039123GGAMDKHDFTALYEQWFALHPFKKRDWVELGKVHYQAFSRESVALMTEALGQLTEEIDNFPSPKQIRAKLHQLSNNKTEGGEGKTNVTSQNETLATRLLEHIQGVEYNGKAVKRPEGVPNWVSELVESVNNQLPDDCPINVRLARVGLAVAQGER
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