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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024220 Open in IMG/M |
| Scaffold ID | Ga0224568_1000001 Open in IMG/M |
| Source Dataset Name | Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 288809 |
| Total Scaffold Genes | 247 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 182 (73.68%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.0448 | Long. (o) | 13.618 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017015 | Metagenome / Metatranscriptome | 243 | Y |
| F023648 | Metagenome / Metatranscriptome | 209 | Y |
| F078987 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224568_100000122 | F078987 | AGGAGG | MTRINLFRTMQSRTTLSRAISFRTTPDTLNSVAWGKGNFIKNTFEASSPLVFAALLLACSLAVGCSSKNEQPKPVSAVNQPSTTEPAPITTTPAPAPVAPVLQVAAKPAHKKVVRKAPANATYADKDFGVTFQYPRKYVLKTGEAADELVSAGPIPMDFVQPGGAALAAVALPESTYAGTDLAAAFFNVSVNKALTANQCGEFSVPQPNPSTPSDSPVQATAQLATPPISKLMIGDMELQSTETNTGGGTTKGPREEAAKYYHVFENGACYEFAMKVSTTGTAVAATTEASTKHVDRDEVFQRLEKILATVKINPVTAPEVNAEAKTTVQPTSVETPAQ |
| Ga0224568_100000158 | F023648 | GAG | MPEWNGRQRLLAALVLVCGIAAVGAQAQSSAACQFVSFKVALNAGDNFERELGAGLLFRVRSQKEQGWFLDIVPAEANTKDYIYPVNLPLRFNGNQTLGPGYGETVKSSLAHSHEMKFLLNRADYDRVFGLIGNVLWSYRTSDPDKALSDYTNAVDEASKGTLRINVSSHKTDPKTGALTRIKLRAQITVPANFQFAPHLNPFPWPCHP |
| Ga0224568_100000166 | F017015 | GGA | MGGARYQWLSKSCEHEGFLVAVFLGNITRVQNLRSFLKALQGKPGPRFPLLLEEVLYDGTHSGDCILSKYAPKLLKEVDTVLHSSDILADSEKEFFNNMKQLCEASIATGNAILF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |