NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247691_1004076

Scaffold Ga0247691_1004076


Overview

Basic Information
Taxon OID3300024222 Open in IMG/M
Scaffold IDGa0247691_1004076 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2593
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001463Metagenome / Metatranscriptome690Y
F031163Metagenome / Metatranscriptome183Y
F055097Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0247691_10040763F031163GGAGVPRLGISILRLLMFAGLSCLILPLHAQETTTNQDQRLAHLRMNLVQDQVISGPIALQYSFGLMPASAQSYIFLRPRSDAFSFERPVWTSSPGTIQRMESAFYCNDTPFVDQVRLPLATFWGGRVKFIGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGIHMTFSWHGGEAEYGDSSGLHGIEHLVRASRGFLPFLSGRSDSSSAALR
Ga0247691_10040764F001463GAGGMFLRMEDRMMLNGNKKPPLIEDLRAHSQEQIAELRFLLDTGLTGRPDPRRPGFFELDGVANVYYVFRYPTGHKVLLLAAWQREVDPVAEMVAYSCPAA
Ga0247691_10040766F055097GGAMPDPTEPQAADKRRTRRAKIAKPLRVRPSEPRDEHFEDLPVSVNASKDGIFFQTRRKGYYKGMRVFVTFPFTSHHDPMNCEYVAEVVR
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Institute for Fundamental Biomedical Research
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