NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233399_1000910

Scaffold Ga0233399_1000910


Overview

Basic Information
Taxon OID3300024231 Open in IMG/M
Scaffold IDGa0233399_1000910 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 43D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10693
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087884Metagenome110Y
F099114Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0233399_10009105F099114N/AMALTIQDQPTTNIPEPSFAPIEYLVNSTETAQSGFKVIASLFTDPTGDNTKIATLQLNTIPSATQVVTDIQNIIQSFVSSDYSILTGDTTDISQSALKDFKIAFQEYYSGALQGSVVSGNTFDSWNSSPKYIEWADLSGSTKDYYNWSIEDASAETDKEFLNGFEQDAEWFNLGKSNNFLKVRSTQKYQASWIMRQNLSDTYKIYLKTMDDTFSTILSTTMTAANTAGLYTLDVGASEIASHSWGTTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCENTYTDYELHWLNRKGGYDSFTFSGKSNQTTSINKNFAKYNTRTIGASSITHNTYAQRKRSFHTSLRDNYRLNSRLLKDFEVTALEDLFSSPEVYWKYDTNFVSVNVTGNTFEHAKSENGQVYSMELQMEIDNSDKRQW
Ga0233399_10009108F087884N/AMAHTPLYNLTVGQYQDINAIDENLSMVEQNIYSVAAIKNITYEEASKIKMSEFKKIVDELGEFNVRLLEKIRIKNKIFLNGTEYHLEHKPDKLTSGQLLDIINIRSKHQGEAVKVMHLLLSAMSRPKSKEYGDDDLTLHERAEIIKQVNLEEVWNVFVFFWNLWNDYLNDSEDSLSKWMVETLETTKQILGIGGDYSA
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