NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233399_1003206

Scaffold Ga0233399_1003206


Overview

Basic Information
Taxon OID3300024231 Open in IMG/M
Scaffold IDGa0233399_1003206 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 43D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5755
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040106Metagenome / Metatranscriptome162N
F042905Metagenome / Metatranscriptome157N
F060814Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0233399_10032061F060814GAGMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLEDIINENSPILAFVSTLIDGDLERFVKYISNNINIDTEIEIGIATNPYNFFSIPYLERTKKALAYLDENLEHEITYTFVINIRDYNLDYAELHAYAI
Ga0233399_10032062F042905N/AMLVHLNSTYAGYYSYDAEKSPTNIDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGSYHPDEITIGPTDIFDAENFSEIMNHPYMEKLYGISGVGFTSTLLQPYSEVKEKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDNDLDEWYKNLELFNYGSVQFRVNYHKDVFKRIGYNDLCQKVFDDFNAPIIITPSFLTDRNVRGKVDQHLANFRRDMIEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYINPFLYDVIIQRTSQFETTMDNNTLYDNIDYAQQVDDCNGCQYMMSCAERNIHLYMESRGLENCVALKEYMYASH
Ga0233399_10032065F040106GAGGMTMQKSYCKQMRYSGPESLAPSDATKFDVLIQMEVLSGCDHGCLGCFVDKNIDPAMNQMIIDRAKELTDGIKRTGLNLREFVIGPTDFFTAENTESVLNNPTVQEIMREHKKARIAAPAKFDKVSMDKLKHIFSILDDEDKYRREMIIEFIMPIGRVKEMLDDDDYYKEVMRKVEFFKTGTPKQMDWSWTLQASNVVGKSIDKEVYNRIINKSVDEYETIVEMNPAFSRARSQLVKRKNLFAWNDFLGRVIDKDNANETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLDNKNLDVTGLTFEEILQRKNELVTKGIHKLSKIKDCSGCQFAIACSSRLIGEAQESLNVKGCVMNKEVLTHYNPFDFTWNDDAKEQLGAIS
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