NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224521_1024283

Scaffold Ga0224521_1024283


Overview

Basic Information
Taxon OID3300024233 Open in IMG/M
Scaffold IDGa0224521_1024283 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0224521_10242832F007212N/AMSGWPTIDAAANAIMQQAFGEPAVYQPVEGGVPVGDPLTITVVRDARVREESGAAANFEGIGVNPADLPVPPQRGDWVTAWGLQFVVATVRQPDPYGMAQISLTLRAGQTAG
Ga0224521_10242834F002448N/AMINAKKIGLEFVTALQSLPNLLEALGGDADSIQYYSENRVVFNRRTQNNTREAILSMPLGSIMIVWQGSGPGRLGNAQVYAHNYSLYLRAPEIEDVGYEDICDWIVNDVPVGGSLKMLHTPIDPNCEPMDFQLPNSQRNTVVISADGTTFEYFEVPVRLIESFNP
Ga0224521_10242835F010139GGAGMKVFMKSPQGDDIKEVEATAAALSPLMSAGWHQVPAPASEQPAS
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