NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228655_1001187

Scaffold Ga0228655_1001187


Overview

Basic Information
Taxon OID3300024236 Open in IMG/M
Scaffold IDGa0228655_1001187 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 67D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8259
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068149Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0228655_10011878F068149GAGMTLDEFQSKFLEFTEKQVEPLKDDGYPVCPYAKSARIKRALQFIDGRNDLTIMDTFDPKTYQMGIVWLGDLDDITPVEKICEEYSNKNPHLLYFTSTRQSGHFVKNFTDCVFIQRANDLLEKRKHLHDNTNYYDSWPDEYYKLIMGH
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