NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228655_1018327

Scaffold Ga0228655_1018327


Overview

Basic Information
Taxon OID3300024236 Open in IMG/M
Scaffold IDGa0228655_1018327 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 67D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1765
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028771Metagenome / Metatranscriptome190N
F062669Metagenome / Metatranscriptome130N
F104955Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0228655_10183271F028771N/AMSFLRGNIGESLWLNELSKTHTDIEKAPNKKFYDWDIKANYKGNEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTRKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNNDVKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI
Ga0228655_10183273F104955GGAGMPFNKDVSDHFYELGLDLLFIGYTRADLRLWIKQAEEDECYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0228655_10183274F062669GGAMAKKKKTSFNYYKTNNEAQSHCFKKGYVIYPEAFEGSWRVSIELGHRKHTYPEVLSLTEAYIKIWKEYEKIQNRDNNG
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