NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1000011

Scaffold Ga0247724_1000011


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1000011 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89329
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (64.16%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Associated Families16

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000919Metagenome / Metatranscriptome834Y
F004255Metagenome / Metatranscriptome446Y
F007569Metagenome / Metatranscriptome348Y
F008943Metagenome / Metatranscriptome325Y
F018913Metagenome / Metatranscriptome232Y
F019061Metagenome / Metatranscriptome232Y
F024768Metagenome / Metatranscriptome204Y
F036765Metagenome / Metatranscriptome169Y
F037700Metagenome / Metatranscriptome167Y
F055547Metagenome / Metatranscriptome138Y
F058114Metagenome / Metatranscriptome135Y
F074802Metagenome / Metatranscriptome119N
F077003Metagenome117Y
F085383Metagenome / Metatranscriptome111N
F090316Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_1000011103F019061GGAGMNEREKQLSREMNATEPTDAEILEFLLNQFKSHSLQMNGESDWVFMNSGYPMSRAKGRTARDAVIAAMRAK
Ga0247724_1000011106F008943GGAGGMKFDEFDWFAILIIPISLIVAGSIITYDAQQQRVLFQQTYNKNLECRQALKDQTMVRVNEICGTVPVIGDFVK
Ga0247724_1000011111F037700N/AMKKYRIKKQTYGDTTKYYPQERWFFSWSNIFAYEVYFDGGYDTLEEARKRLCEYCRKPVVEYLNFDLNEDCK
Ga0247724_1000011117F074802AGGMSECTCSYLQMGTKTSNTKNLNPNCPLHGTDSVWYNSPEQVNKRKDRSQRLRELYDAARKAREDVND
Ga0247724_1000011124F085383N/AMTDQEKLYKLCILDLLIAIDEDIVDWRNYYKLWTAVGLADKTLDIWAGDNLKQMRDELIEELK
Ga0247724_1000011129F036765GGGGGMTIKATELLKLFTKAKQLGFSVEVREDKDGDYVVRIFEMFRPENFDEKAVITQKGESNWNKDGYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK
Ga0247724_1000011154F004255N/AMTDKSKIFFGIWKCAYQRRHLYRGTPREQREHDTLLMCLNMKDIQFYQFDTEKPKHLT
Ga0247724_1000011155F007569N/AMNFTQEQYKLIYTAVRRHQIEKTVLNSPEYQECSEILDKMFDTVYTQRVEQPT
Ga0247724_1000011161F055547N/AMTKQDPNWFQKKWGFPNPTPGDIIYQKLEELEDRIKVLEEENVETSNLLYEIMNSMEAIDRRIDIVFEEFTK
Ga0247724_1000011167F000345GGAMVEKQPNEFGKALQEWWNSDACKQLQKENEEAKQRAVGKYFMLSEEDKLDMVQAICTIMCKAESEGTSHRGVMDALGIYPAGFWIDNLMDVHNALWSYYHDQKKEQELKDDLDSLDEFIK
Ga0247724_100001170F077003GGAGMVTLLLTMTISCADALGIIHRLTKVVGLTPIQKSEIIQEVRKTIPFCPVTVKKDDK
Ga0247724_100001183F000919GGAGGMRFRNIEFRWSKCNNKYELVKWNTPTEDSFFKDPTCYVIAFFDKDKESYNMRTIGDRFFEDKDAWVVGKYSLEFLNAIFDIEKQEEDNL
Ga0247724_100001184F058114N/AMIELQFTREELRHLYDVLLRNHLQVKQSVMNKIDKELIADEIFELLGDLECLDPILDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK
Ga0247724_100001189F024768N/AMNYETEIIDGHKAVVRHFFEPHEIQVGSRWARADGSKGFVTVEGFNYYGSVNPYEWDVVYSWEENGVKKTWQKEMFIFQTRYCLIVE
Ga0247724_100001198F090316GAGGMPDDLQREEELFFKALEEYKEKKSQEPKDKTTNTLPAVIAAVL
Ga0247724_100001199F018913AGCAGMTNQQKAEELLKVFWESQAHNPAWLLQETLQHLRKQLSGQNPVNLNDELNVMYVLGYDDCLKDIDAIIDELELL
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