NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1000269

Scaffold Ga0247724_1000269


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1000269 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13122
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022586Metagenome / Metatranscriptome213N
F042162Metagenome / Metatranscriptome158N
F047014Metagenome / Metatranscriptome150Y
F057882Metagenome / Metatranscriptome135N
F063335Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10002692F047014N/AMSFQVNEARDQWIRYLINFTEVWGKIVEVKEGKEAEHYCARIVNIIRKLKKLDPQWRLENFASERDLIPVQYNSKNSNRTFQGA
Ga0247724_10002693F057882N/AMSCGDNLKEFNHPEYGILDPSQVRELRDELTRCFIDYIGGLSNHLKERETVDIEKDQVTKSHYLRVCATIQNLNKIDPGWCLRYFAPDDECLKIKLHDCKCCYHTCQELSKVIQSQKSNSNKSSQTEDKELTQE
Ga0247724_10002697F063335N/AMERQKVKELQKVREERLALERAVMQICSSSPHPEWLGLTLIKNYHFIEAINKLVRKEKALTAEISYETKEHEENK
Ga0247724_10002698F042162N/AMSRQILKSKVKEQVENKVNPILKEKYQKDIAIKLFKSSSEVIRDSIDEVTKSYYLNYPREIKENFIKEVLTQVLEWKDKIQERSKSKDITGLDQLLSRKIIDILKEYLRALKEVDIDKRQHELYQVDALASVTYYAKIEDLVKSPFSLELCKKNNWIIEIPKSN
Ga0247724_10002699F022586GAGMDNTEDKPSLSPDSFYEIIHEDGDLISYEQEKLDKLLDSIIIEIKPTPELEIETKEKIQKAVEITEDIISTIDRFIEDATLAENNIFTGFHEDHQRDAKSSAMKTLDIAVKLRENNFLSLVPIIRDLTTRIEWIELILSNTSIEQMKNTLENRKTALK
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