NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1001077

Scaffold Ga0247724_1001077


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1001077 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5512
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010764Metagenome / Metatranscriptome299Y
F016800Metagenome / Metatranscriptome244Y
F037700Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0247724_100107716F037700N/AMKNYRIKKETYVDTTRYYPQEKFLFWWYNVFAFDVYFDGGYDTLEKAQKKLCNHYRGTMVEYINFDPKNNYKHQND
Ga0247724_100107718F010764AGGAGMIEIQKNYKLTLTEQQAKELYQLLRTEKDSGCLTPDKELMLVYHELKKIFDSGIR
Ga0247724_100107720F016800N/AMLGQTKELQMLDAFTDYPISSYGDINPPIRRATILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKCCYLYKNEARLDKGIPFTDEELKTLPWTKISSPHSI
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