NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1010793

Scaffold Ga0247724_1010793


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1010793 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1352
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014593Metagenome / Metatranscriptome261Y
F026002Metagenome199N
F036229Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10107932F026002N/AMEQKFKLEFPLDLEIKYDDPQELFELASKEEFVTFMFKNAIAAIKQAIRKNKSECVIYSIQNYNVTVAIKKEHYKTFLNKAIRHYEKLEDYTQCSELVNLKSRL
Ga0247724_10107933F036229N/AMTIYCYYYIKNDPSKEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWAVDKKTVF
Ga0247724_10107934F014593N/AMDPKKDFKKFFQKMFDTPVEIQGEVLTPEALTKKNFIIFVDNYKKAILRSREAQEKFGLDFWSWEDLFAKSLEGLIYYTFDDEVAEVILWYIYEHSLAEDQEDKIVNYGDEQFIIETAEDLYDLICLVEE
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