NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233392_1042823

Scaffold Ga0233392_1042823


Overview

Basic Information
Taxon OID3300024241 Open in IMG/M
Scaffold IDGa0233392_1042823 Open in IMG/M
Source Dataset NameSubsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.96Long. (o)-106.99Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024222Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0233392_10428232F024222N/AKGLPTTIYSAEEDRVLYRLTVVDLAGRTDAATNLLNEAAYFLMREGDLLFTDFPRVYNDERAIYGLTLVVDRTDGSRARTSLYVSKGRLYIADAIVQPARGDKDMTVPSRFDQTIRFPPDGRFD
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