 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024243 Open in IMG/M |
| Scaffold ID | Ga0233436_1028523 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2388 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002915 | Metagenome / Metatranscriptome | 521 | Y |
| F006870 | Metagenome / Metatranscriptome | 363 | Y |
| F007087 | Metagenome / Metatranscriptome | 358 | N |
| F093220 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233436_10285231 | F093220 | N/A | SNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN |
| Ga0233436_10285233 | F002915 | AGG | MKRLFLLSLIVPIICQGKEVFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICIDQNMIKQLETKAKEAG |
| Ga0233436_10285235 | F007087 | AGG | MKKLLLIALTIPNFVLADEIKLVCDGEESNYRNDVLEDTSKTSLKLQVRDDSIVIDSMTYKSKTFDYGAIKGSSKYVKEDNQIVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK |
| Ga0233436_10285236 | F006870 | AGG | VQVTSKLKKTAKFFEPPLFAFLYLINYMKKISLFFLLTLSLVVTSKASSLETKLSPQGSDKYYFHIKGDDKSSEKKLRDVFQNKVNEVCGTRFEIISITTYQINKEGVKNNVLDGSFKCFVNSQM |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |