NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228675_1010954

Scaffold Ga0228675_1010954


Overview

Basic Information
Taxon OID3300024247 Open in IMG/M
Scaffold IDGa0228675_1010954 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 36D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033450Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0228675_10109542F033450AGGAMQELLSNQWFNYTVLLLNAIVAGQILWIAINIKASKLLQYTIFTLGMSYAIAIGGIFKAPGFVLNPEVEVFWLFINALFGLFVIYSFIRNSSVPSLASYASIVFALIGSVTVFSGILEFGMRYMPTILFFTICVYSGVGLIIYQVKVAKAQKMQKRLSYIAAGIVFTIVCFNAFDTYTLVRDTAYTGVSEGWEGGVTEQQDELSN
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