NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228676_1012581

Scaffold Ga0228676_1012581


Overview

Basic Information
Taxon OID3300024248 Open in IMG/M
Scaffold IDGa0228676_1012581 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 48D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1953
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068147Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0228676_10125811F068147GAGGMIKGQKDWDYQFVSDCEVVNVFIPKNTHLAEYQTLKQKLLLLQQVECDNHLTSSIVNLYNTSSIEWIEHVRKMGHKYVAFWFDGCWPKTDGIEKKILTYINRLEKKDWITAVHPKYVDSLMLLNIDEFIAWPAKAPNFGNYDFWAENWLGESTVELSKTIERNIVVGAPKTDPVNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPVYFVNTEPSSPTVADAIKHTVFEQYVGVTAGFKLLYYAYTYGIDIDSTKFVWYDFDAYSVKFKRLMVEEWDGFDYPAFVKQWCKDNPDANSLLLKQVDKDWLNIVEQFGGMDNWLDFWMQVKLCKHEFLE
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