NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1005694

Scaffold Ga0210003_1005694


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1005694 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9489
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F023555Metagenome / Metatranscriptome209Y
F025977Metagenome / Metatranscriptome199Y
F048942Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0210003_100569413F048942N/AMLKVKELKEDAMMDIKVNRSFYLMAKAASYTILQSMGIQEMKNGDEYFKKIIKEKYEDLDDTQRAFYTIILLLAEIEKQATENNLYVEKEILEPDDEGYVEPKI
Ga0210003_100569415F025977N/AMTEIFNLMVKEGLTPNSFYVLYCIKEKIVPTNIINKKLECTKLISQEWITTDLQLTNKSIIFTSTIDGYFKKSKKKTSKTLMGSNFMQNIDAYVKIFPNKKLSSGKYARAPAKSLENAFRWFFENYDYNWQTIFTATQKYVNEYATKNYEYMRNSQYFLRKQNVDKSWDSDLAIYCEYLNDTPETDENPFKELIV
Ga0210003_100569417F023555N/AMSSLRKDKEREFYTQHMDAFKAIGIADPFFTIKTAFFKKGKYGRQCQFFEWELTKKEDIYIEFYDNLYVDNIKDIVPMNKDRQLFKLKYNSYYEEEYDMIEQFDDKGNLSGKFLVPVNEMSVVLKSGQEISYSLYEKRKEDAQSEIPELQKSTTLFPDFEQEFSLKKNENSNEVKQALMDFAHSIKNAADELINKMI
Ga0210003_100569419F003038N/AMALSTEDLGNGNGAGLPKTISPGNNILKINSVTLDEFKFIENAYHLLLHVESKPIDGFEGFSIDRSNPDAGNYKGQIGRVKASQYAFADGETKSGIKIQRDKSVLIFLQNLCKTLGINDWMSKQHNQHDTIEKFVKAFNDEKPFKDIYLEFCVTGKEYMGKTGYTNYDMWLPKAQGGKYATGAIDSGKVITYNEDIHLKKLENTPVESFGDEDFSKPNTGSDFDLD
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