NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1014546

Scaffold Ga0210003_1014546


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1014546 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5119
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F007652Metagenome / Metatranscriptome347Y
F015852Metagenome / Metatranscriptome251Y
F060835Metagenome132N
F071094Metagenome / Metatranscriptome122Y
F072852Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_101454610F071094GGAMIIFLLTVSVCLLLLVVGLLLYIGYKVRQFEDTQDVIFDAAVNAEERNREIELNQEAILNAYSRQN
Ga0210003_10145462F072852N/AMTDSQKLLGGRGCKVLGVAAHTSLTGYAFIAQEDTVVTVFTVGSTDSLAAYGLSTALKAGAYIVVPSGEAITAITLTSGSVIIYNQ
Ga0210003_10145464F007652N/AMNEIKYPPVRTYYICFDDERTEVKSYGAVEPNQVFETIWIFDEFTDEAQWIEALLVWGIVPDINEEGELVL
Ga0210003_10145465F006492N/AMDAILEALASYGIAGIFLAVLVFYLNKLTDIHREERSQWQEANNAHVDKFSDALKDNTRALTEMRGEVKENRCKVT
Ga0210003_10145467F015852N/AMGGDIAIRLIKAYTPYLLAFLLGVLIASKGCGDPETITTVIDRPVPTVEYVDRWRTDTVRFVSKKVITQRDTIYNDRIVNRLDTLFLVDTVSIVEAWLTEVAKYDTTVNDIRLTWQNYQNRTENLSITVQEKVVGAKFALGVHGLVGLQSDFKHSYTPLFGVGLQATVKKTYISANYGFNGQHFIGVGVGRNLISK
Ga0210003_10145468F060835N/AMIYDTNPITREAIDKLLEKNASNQANLGTESTDLERFETKVKWAELHRKIRTLDPEFAEMVHPQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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