NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1168834

Scaffold Ga0210003_1168834


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1168834 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)922
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056916Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_11688341F056916N/AMVTLMMVKMLTAASLFLLATEAQSNELDNLINASSAIVSQIDKGIKLAGAGYGYANVGGALSNGQLAGTAHISTAQLDAYNAALGNMDTYQAYGDVQALLETQAANELQLMDAAIEKFTDVVVDMIAVVEIAEISEEAETPDDKAAVQEYVLANEAALTITSDEVDTYNQSLDDIEEHGNNASAYLGVAANTEAVAFLQQGAEDNNSNADLGTLTFSQDQAWVSLAYAGTNNANAVYLDNRQGSFGMDFYVSEADILAAGAQSELYLTGPTAL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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