NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224564_1018197

Scaffold Ga0224564_1018197


Overview

Basic Information
Taxon OID3300024271 Open in IMG/M
Scaffold IDGa0224564_1018197 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1257
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001287Metagenome / Metatranscriptome731Y
F012392Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0224564_10181971F012392N/AMRHQPYLCVFLVFLGMTVPLYATAQVDDGVSLGDLARSLRQSKDPKEPAAPNIIDNDNLTQVMDDVEHFRLSTRPMFSFDGAGKTFQMSSPDGTCSLSFNANTTALLSNPYVSQDLPPEELAKLDGPANIQGDTLEVSMYNASAWNVREITVGLTIVRRDDTSASEYGDAKLLPAVAAYTAPSEKHSDSTLLLHLKGAAAPLATTVYREKLDTTLDEGQEWHWAIIEAKGIPASPAPSGSTDQSIPVEHATP
Ga0224564_10181972F001287N/ALVHLCYAALGFAVARWIFKREPMPMADPVTRFRSSGLL
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