NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224564_1097833

Scaffold Ga0224564_1097833


Overview

Basic Information
Taxon OID3300024271 Open in IMG/M
Scaffold IDGa0224564_1097833 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004291Metagenome / Metatranscriptome445Y
F010654Metagenome / Metatranscriptome301Y
F036398Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0224564_10978331F010654GAGVKQHLGRQSGVQTVEVSLLDGKVDVTPKEDGQIDPVQLLKATYDSGVTAAEMDVIARGKIVKDSSGNLALQAAPNQSFAFAPNELSKGLESLAGTQTTVTVRG
Ga0224564_10978332F004291AGGAGGMNTKRVALLVLLGSIVVVPVAQAQIKHVEMRVEGMT
Ga0224564_10978333F036398N/ATYVGVRPGVHVWLGMDWDAARSTGASFMPVRRHISFGITQQFRLHL
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