NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247692_1082138

Scaffold Ga0247692_1082138


Overview

Basic Information
Taxon OID3300024279 Open in IMG/M
Scaffold IDGa0247692_1082138 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)508
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001184Metagenome / Metatranscriptome755Y
F008054Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0247692_10821381F008054AGGVNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIAHMPAGSPEVNWLIQPERGPRLVLVHRS
Ga0247692_10821382F001184N/APQELPADHAGSVLCRLLIAHPEVIDIEILGQLDLPEGIIYSLGVTLPDGRELLIDVGDV

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