NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247687_1001121

Scaffold Ga0247687_1001121


Overview

Basic Information
Taxon OID3300024286 Open in IMG/M
Scaffold IDGa0247687_1001121 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3174
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081845Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0247687_10011211F081845N/AQLPGNNPAIGATFVAWHNGPQLTVADRASLTPLTVDSVPGVQTIAVSRSWLAYRTPTEIHVRPVAETGPGTTVVKVKSPAQLGRPALGVDLVVFHRATSEASWITAVNIRSGKRLQLRYSQDALLLNPSLDGGQVLYVKEARCSQQLRIGRLGGGGDHLLYEIGPLAGQDLGHERHHTSQGEHLPCPFKPRVTKKMLWTTALSPTTAYVTVLTPGNGGHTIPTLLAVARR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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