NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247687_1003194

Scaffold Ga0247687_1003194


Overview

Basic Information
Taxon OID3300024286 Open in IMG/M
Scaffold IDGa0247687_1003194 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016077Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0247687_10031941F016077N/AMSTAPTTATSQHEGTGSRLRHVLIGALFALVLLIPKLLRIRSNAQSWMAFRIILAFSGAALVIPPLSLWNSWLAAIAGLAMFLAAILLPPAKPHTTPDDKARELGSLVIVNGGKYQPGSSAPAPVQLYVGPEQIWALDSRFRPLLVIPAAEITSASAFQERDRWILQVRWPDNSVEFTYHGIFAEHLARVAESTLASVKHSPLTVLPRSR
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Institute for Fundamental Biomedical Research
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