NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179589_10541973

Scaffold Ga0179589_10541973


Overview

Basic Information
Taxon OID3300024288 Open in IMG/M
Scaffold IDGa0179589_10541973 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034660Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0179589_105419731F034660AGGAGGMFEVPVDKQEAKLGYERIGISILVLLVIAGAVFYFLTKHSPKQSAPVAVAPTTPADPVHDLKIVRVTMNKDPLGTTAVWLVTLQNKSAAYTYSNIKYETSYVGPNDKPILVNQGSIADSFGPGDLHNAQIRDTLYPNGTAWYKFKIVDATSALR
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