NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000020

Scaffold Ga0255147_1000020


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000020 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112301
Total Scaffold Genes176 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)140 (79.55%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000671Metagenome / Metatranscriptome945Y
F001043Metagenome / Metatranscriptome794Y
F001106Metagenome / Metatranscriptome776Y
F002501Metagenome / Metatranscriptome553Y
F004051Metagenome / Metatranscriptome455Y
F004666Metagenome / Metatranscriptome428Y
F005092Metagenome / Metatranscriptome412Y
F005745Metagenome / Metatranscriptome391Y
F006744Metagenome / Metatranscriptome365Y
F007363Metagenome / Metatranscriptome352Y
F011394Metagenome / Metatranscriptome291Y
F015208Metagenome / Metatranscriptome256Y
F015730Metagenome / Metatranscriptome252Y
F021481Metagenome / Metatranscriptome218Y
F037190Metagenome / Metatranscriptome168Y
F041724Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_1000020109F004666AGGAMTTKRDYLKAQGITVGARGRFSSAAKQALAEATQKGIQFTAEKPTSNRKK
Ga0255147_1000020112F005745AGGAGMELTDSLQRQVDHGSSGLDILHGALKVLMVDAEDELRMAQETEEENDYDDAMESMERKYWEGQVDALAHVYSLTYALSFAIAERDKK
Ga0255147_1000020115F041724GGAGMADRLELNDRGSFLDDENQMVIDAVITEISEHLFEQWNSSNLDEGTFYADYQIALMSSDPYLQSKFNLFYELTPEDEEYFNVGL
Ga0255147_1000020120F001043AGGAGMSDYKSGWDDGYKYARDEIMEKLREIDINDIDSWILDRLSDMIEGGKL
Ga0255147_1000020121F000311GGAMYFELTAPDRLSLEMAYWEAQVIGLDPHFMPPLTFNIGTGSIEKVSRIRDKFNLTETYVSEYEETGYTRR
Ga0255147_1000020126F021481AGGAMSPILDTKKGRFYRKGDVFTTGKSGITGTISEIISIRPNLTKLRLDTGSGLRYAMVKVGK
Ga0255147_1000020128F004051AGGAMTINGYTYKVGDLFTTLKSKKTGVIKEIVPNASGSVRVLLELPTKETRWTTISAESLSN
Ga0255147_1000020136F015208AGGAGGMYKITVAYDENSPHFTQQIADELEAHKSFASYVDWGFAMDYSTVNLYTPSGKCYTKIFYREGRRVVEK
Ga0255147_1000020137F005092AGGAMDKLETALRAIKNCDACRGMGAIYWGNGEDYFDYETCECNPYELILDNDGDVIWDNGLLSENELSIFATQEAN
Ga0255147_1000020138F006744AGGAMDLIEFRNFINAQREASKAEALSVLTATIQERKEKENG
Ga0255147_1000020139F007363AGGAMRSYSIVDLLIDQYYAPTSMRRRYNGGIINFAEKRDDVYLSEGYEAYSIRYRPTGSLKDEWATVAVRLPD
Ga0255147_1000020140F015730AGGAMLTKKTLDKIIFEYQHGGVKQYHPEISMSERKALLKYLFSLPAECSAECEATHTA
Ga0255147_1000020142F037190AGGAGMDRYLLIELGSDGIAFETAQFDFYASWLGLGLVILSVVAYKIYRNKKGK
Ga0255147_100002019F001106AGGAGMSFSTLKIAELRQVAEDFAVELPNSKNKTEIIAALAEEGVTWDVYQKTIENIEDSKLEADEVLPTFDPKKEQPEDTVLVKMERANFRYDAMGFTFTKEHPFVAMPTEKAEEIFEKEEGFRLATPVEVREFYA
Ga0255147_100002040F002501GGAMMHCRRCGGRVFIDRVFSQKLHIELYCLLCGRRWMINKEMSIFGRWLDEKELEQRKTFGISS
Ga0255147_100002063F000369N/AMEIELADHFDKMNKVVSELLKGNNPTQIATITGYKRAEVLDLIDEWKSVVHNDSSARERAKEAVSGADQHYAMLIKEAWSTVEAADAQGQLNVKANTLKLIADIETKRIGMLQQVGLLDNAELANQIAETEKKQEILVGILKEVTAGCPKCKLDVAKRLSQITGVVEPVVIDTEEASGS
Ga0255147_100002065F000376AGGAMTNIYQERAKECKCCGKHVPLPTVLREYNGVMMCPTTYANVLEYTRIWKQIGSRPAGSIRKHFSEYVQQVVETTIDISDQTKI
Ga0255147_100002081F011394N/AMDINQWTGELNKPVFYTKEMAKRVREIKQPVYGLQMDIVKFPEFLAIRLYENNFMQYGDAERIRIIDYIEMVKKVLESYGVRVELEGAKGERIL
Ga0255147_100002083F000671GAGGMEKILCYSCSKSKNKLNTRRSGLLTINLLMCETCIVSKYEPRWVIILAGRQFGPDHVKDYIIKKRYIGQPILADELLV
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