NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255147_1000022

Scaffold Ga0255147_1000022


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104732
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)128 (77.11%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Associated Families20

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F004092Metagenome / Metatranscriptome453Y
F005092Metagenome / Metatranscriptome412Y
F007115Metagenome / Metatranscriptome357Y
F007363Metagenome / Metatranscriptome352Y
F013526Metagenome / Metatranscriptome270Y
F014144Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F016958Metagenome / Metatranscriptome243Y
F017484Metagenome / Metatranscriptome240Y
F027449Metagenome / Metatranscriptome194Y
F034902Metagenome / Metatranscriptome173Y
F038479Metagenome / Metatranscriptome166Y
F045752Metagenome / Metatranscriptome152Y
F049497Metagenome / Metatranscriptome146Y
F052590Metagenome / Metatranscriptome142Y
F060903Metagenome / Metatranscriptome132Y
F082666Metagenome / Metatranscriptome113N
F097345Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_1000022107F097345GAGGMANVNQTAFPPYYVNKYINGQLTDFGILSGYEQMIPIFPTSPTNIEDVFKNYIGAPGVGDPLLIQYERLVRFRVGPFYPRKREQLIYYLYCTDLSKVSDAHRIITDCMDREDASAQDLNKWINNNPAEFPDGRNVFFHNSRVYQADETRDILELASARTVYSNKLIIEYDYHSSQSYYN
Ga0255147_1000022120F049497GGAVATTNKDFVVKQGLKVATGVTFPDNSVQTTAYTGSPLTVGSTFPVSPSTGAMHLDTVTSKIYYYYNSTWNPLANYDDTQSVVDHDHDAGGFVEDTYQYTGNGVTLPAFIWKDFDGGSPSTTSFSAVIDGGAAV
Ga0255147_100002213F082666AGGAVEISPTTLEPYLQKQVDHDISGIDIMHGHLKVLMLQAEQELINAQALEDETEEAMDSMERKYWEGMCDAYAHLYSLTYDLSFAIAARKEEE
Ga0255147_1000022145F016958AGGAMKLTITSMAGNTSTMELPTKENVFYFIDLYKKSLKKNQRVKITCDILGIDGYLQGTAPLR
Ga0255147_1000022147F038479AGGTGGMTTLTLNDKIAIAAEKVANGELVSFRGASVTTYAKVMRLANRIKQEREFPQCPCGECD
Ga0255147_1000022149F017484AGGAMSIEIFRMNNEGAGWVDIEDATTAELLDLELAIVTKAPMQMLCFKCHTPIPKGNVCVNHKNVKGGIYLD
Ga0255147_100002215F007115GGAMRILRGLRLGISKEEKVAIAIGRLVSDFGLDLEAVGKYLATTQPYVVYARVLEVLEATEYNKTVSEYRQIGQYYGDQLR
Ga0255147_1000022150F013526AGGGGGLTKKNVLISFVTDAETDIDAVFSLNKILHKLSDEELEKFDAFTVLDVE
Ga0255147_1000022152F015730AGGAGMLSQNTLDKIVYEYQHGGVKNYHPEISMSERKALLKYLFSLPTHCSCCVKG
Ga0255147_1000022157F007363AGGAMRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFAIRYRPTGSLKDEWATVAVRVSDY
Ga0255147_1000022159F005092AGGAMTEKLELALRLIKSCHICNGTGYHYYGNGEDYFDAESCECNLYDIILDQDGDVIWDNGLLTEPELAIFGTMEAN
Ga0255147_1000022161F000808GAGGMEYNYSLTISYDGELVSTTRTADLLEIVNAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGWVSIK
Ga0255147_10000222F000684AGGMTLGGYTYQVGDLFTTSKTGVTGRIEKFIPVRQNVTRVMLRLANNQTRFAMVKTY
Ga0255147_100002224F060903AGGMPNWTEELSDEQKKQVWEFIVFTVKEIREQIALDIEYTYEVWATHGKTKSRRTKKAFEVCADIARGLNERMPDETNRGSTGEG
Ga0255147_100002228F014144AGGMEKGRVVICDLCNKTIEVRWGIFAHQSLYRHKKADHK
Ga0255147_10000223F034902AGGAMISTALAIQEATMEAVHDEETMNMAAHIFHSRNEVSEDEFIRMMFMYSAHLSAITATLVTHACLTESQLNDMLETIKEMETMGKDIE
Ga0255147_100002231F045752AGAAGMADPNQTPQRGDWACPCNGCKKAVAFERKQLLELLEVTKVEYQIYRGSSFDKDGNLLWMKDDVEAYSEGIDVAINLIKSRMDKKK
Ga0255147_100002252F027449GGAGMYTDKMRMAFHSIPAPKNFGVSLIDNETFITIKLDERSFIRMTHDEKLDAVKYVSMVKKALEMEGAIVLVTREVIK
Ga0255147_100002254F052590AGGGGGMIVTNLEKMEKIVARNNNLSWIGWDVADRKRSDAARTAVNGVRVNGVWYLQRIYPVNRNGWDIPNKYRG
Ga0255147_100002287F004092N/AMADSRFSTYSGKFPCKECGEEATSLRLWIETGDATWMCSKKHLSKVNLIPQKKTKKDYERKERE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.