NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255147_1000035

Scaffold Ga0255147_1000035


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000035 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83290
Total Scaffold Genes134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (54.48%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F001018Metagenome / Metatranscriptome804Y
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002333Metagenome569Y
F003601Metagenome / Metatranscriptome477Y
F004278Metagenome445Y
F008128Metagenome / Metatranscriptome338Y
F018836Metagenome / Metatranscriptome233Y
F027818Metagenome193Y
F034160Metagenome / Metatranscriptome175Y
F037205Metagenome168Y
F042290Metagenome / Metatranscriptome158Y
F056552Metagenome137Y
F058079Metagenome / Metatranscriptome135N
F073444Metagenome / Metatranscriptome120Y
F087064Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_1000035100F001165N/AMTNNTPRIPDSMDMQRLQAMQLVARMKETSDRLGMGFIGGFIAPDGQKFVMTNMDEEESQALLPDDLK
Ga0255147_1000035106F027818N/AMFSSTIIGNVSYMELATHEGREFLAITVAVNDAYDRSCRIKFNNSNGLLTAYRNGTFVIGQQIILSQYDVRISSIRTHYTKDDQLLPLKYPEIALTNVRATLGSAPKPKAVVEPRAQAVPTLEEVPF
Ga0255147_1000035110F034160GGAMDMKEGAFTAKAKRKGITSAQLQANVLSNPDKYDEKTVKQARLRKTLVGLKKNKDSKQEG
Ga0255147_1000035111F058079AGGAMAKDHRLELDRYLDYGKDLFTKRKNLNFDELFSVKADSGVAPWTLNRFDSTDLLRRIQTRKLQLNPGLQQVGDDTGEIEVFAGIGRFNREKDYDFVNGRALTNQRPEEQPGFNPVWGEYYSLSPTLNPGKRASNPMPRAKNPDPKGYIMAQMETKAKNELEGDKSVAQLLAGDEED
Ga0255147_1000035120F018836AGGMTTSVPAGQTDVDDWFDLDKYKQAAEVAYGFSKKKMEEAGLQERETIGKGATEQRTSAEQAQQFKQADEARDYKQAQRAYRY
Ga0255147_100003518F037205N/AMARFYNPREGEERRPVEIGYDPTSDAGTSGAEVSDLRPEQAYDTDLRRLPQDERFQAESLNDNQGRVAKFMRAAKSAGAYKLRAGIDEPMIRGRTPRVPASIQGVALPTTGDSGGRSGAVGYADKPKPRSGRAYNWLDAFS
Ga0255147_100003523F000973N/AMFAAMKYGLRKSLEDIAFELKGIKNVLSSMWHSRYSTGEIDVLNPEAYADEYISTEECGKRLGVSDQTIRNWIAIGRRDPNKGWTEGIHFVNVSPDPNRKAVLRVPWNQLVQSFSKNRDLESGDLRGKGDSATKMYKTDRGFLE
Ga0255147_100003542F004278N/AMIRTLFADIIDAVIKWWKKVWFEAKLKARLDMIEFENRIQSELEREEQNKPIYREYPVDPKLQTGESQKLGGEMRLTAPWYTDGLEPERKDGEP
Ga0255147_100003566F008128N/AMETVPVPKLTVSFAVDVEVTYNSFSGKTAEEIAESLQDELHDLLFELDQVTGVYTSCTAIATDD
Ga0255147_100003569F073444AGGAGLTPPTDGEDARIKMNCHEHAIEDFNLQLEMNALEINMLADGNEVLPYNEGRLDELEQKKLKLLVGKRFHQNASHAYWYWLQREKVAK
Ga0255147_100003570F001018N/AMTQITQTKLKDLNILKLYEHYAALEKSLPLLTPESQELAKAELEACALLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVEETVTTTKRVVLRSLSGDILDERIEPKSTTKVLPNLDAIRDAYQTGKQLPAGVQVKQDYSVRSTRVFDRKGMDLAASEYPGELLPEIDAAD
Ga0255147_100003575F002333N/AMSTQILQELNAAQACIYTRTNIRRAYQDFDDTDIAGIYLRDTDCVVVRRDGSQQAYARELIKAAYSSYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQTHWADKFIHVSDPEKIKALLQSDQTDLGHLVAPDGLRLPNRPLDMDGELDDVQEQQSSFGEPSCSCGSFQRQLSNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDTRNASPSGTPEKCVAWWYAPPSDHISDGRFVLLHTKSGAQAPLSHWRTYKPQEVFTQHHAWDLFFNMMEAGYTPFPGVSLPQLKAAVKKQ
Ga0255147_100003579F056552N/AMSTPTHDQFTLLYEDENTKVLHEFKALVADDVVQHLVDFLKGCGYMESNIFEAMKELSEMYFDSLSTEVYVMNAGGSKAD
Ga0255147_100003584F042290N/AMTLTYRGVKYDKDEQAKKDKAWWNLAHRPWLRLTYRNIGYNPFLTGGQIK
Ga0255147_100003588F087064AGGVHLSFLNTTLLILTTAITMSTKAQHQYAIGERVAERPKAHGIFAIRQEVKDRIQQYRTQRYGTVVGINIKPNRSGSKQKFLLIKWDHLQSPTEHAQMRICPADQLVKLQAEGYGFQIE
Ga0255147_100003592F003601GGAMSDYTDDQLLAMAMANIGEYITDNSPKYILIEDDPRNEEDYDTWEYGTEPLPHDHTWHSTSIDVEVSPSEAD
Ga0255147_100003597F001807GGAMVNYCSVLAIEDVQFTETHVTVTALVDEMRLLYRATHLDPEEWAPALCTATVELDPDEPIPLDEDGFALYLDQLDPQWQLVEYD
Ga0255147_100003599F001120N/AMTKKSLISFDRTIHGVNITEHGVKSLTKAVKLGPFQLTLNASPNGVKGSVSIPGTGLSIPNIKLI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.