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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1000048 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 63206 |
| Total Scaffold Genes | 105 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (40.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005382 | Metagenome / Metatranscriptome | 402 | Y |
| F007025 | Metagenome / Metatranscriptome | 359 | Y |
| F021068 | Metagenome / Metatranscriptome | 220 | Y |
| F022611 | Metagenome / Metatranscriptome | 213 | Y |
| F025994 | Metagenome / Metatranscriptome | 199 | Y |
| F032199 | Metagenome / Metatranscriptome | 180 | Y |
| F034858 | Metagenome | 173 | Y |
| F036146 | Metagenome / Metatranscriptome | 170 | Y |
| F057999 | Metagenome | 135 | Y |
| F059774 | Metagenome / Metatranscriptome | 133 | N |
| F069846 | Metagenome / Metatranscriptome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_100004817 | F069846 | GAGG | MPSGNLPVFSGTVDLTPDILNAAKKAGPNAQGNYSFRVALWNNDKRDKDTAPHFKGQVTVNKMENSPKAYSSFWQNGESASGSFASSSSNDDLF |
| Ga0255147_100004829 | F032199 | AGGAGG | MQNEFCESPKSCMAVAYRRETGEELSPAGLDAAYAELVDSFQHEMEEFVRKYCPKRLTDFDQLMEQAFWQYH |
| Ga0255147_100004834 | F036146 | GAGG | MTPCRTFKITTSEGKTIALGAMSPKQAEHFMLAMRPDIKIAMIEEIKPLPEPSADQWE |
| Ga0255147_100004839 | F059774 | GGAGG | MICEEYENDPELDWERPQRLNRQLSLQQLESRLELWKQKHEDICLKLYRAATGI |
| Ga0255147_100004847 | F005382 | GAG | MDKTALIKQFIFNAGSSIVSVEFIKADGSVRRLQFNPRDSKEIKGTGTPIKKPSIVRCRDFRIARTAGEGAWRSFDCERVISVKSNGQAIYF |
| Ga0255147_100004853 | F057999 | N/A | MTDRLIFTMAAFSPTQGQWWRSCAPKGTERRVKLVASCQGFWLWTADFRDARTSKLLTSKFFCTKPNSDEPVALFESADDRQRWMQKQTA |
| Ga0255147_100004856 | F007025 | AGGA | MAVQSPAGAVQMILVDFFSEDCCKGTELVEGWYFYADDDESFVGGPFTSEEAALKAAFDGHGW |
| Ga0255147_100004860 | F022611 | N/A | MHVEFVIRTSVVKLRTIVMFGLPERQPFNYGPYKLWPCFSRPEFQWFAAIDGAPHYFRSLNEAKLFIKDRLSMEDAENPCD |
| Ga0255147_100004861 | F025994 | N/A | MTEEEMKAFVHRSIREHELRVALWSGLLGAALLAGTWHAIRLCYLH |
| Ga0255147_100004877 | F034858 | AGGAG | MLPPSSVRFCISTCQRFAAYTLPVIIPSLTRAGIGTSEILIVNGGCEDWRIDHYGDVPMICTPQNSFEYTPLIEIVEHKLTSSFWFLLHDTCIAGPAFKSLVYEPPEGFEKVAMKHTPSMSIGLYGMDYLMRHKDRLTAIKNMDSSPPALQAWKQWGVPNEDYMLWKLQDSPAGLYHPDKHGPDEWNYQGHADMYGTGMSRRIEYFPQLDLFKAKSNWQGVQPTLCIDI |
| Ga0255147_100004880 | F021068 | AGG | MVDSTIYAVCIPGEKVRYTARSRIVPIMGGSHVLSKEERESLRAEGYAFDDENAVLSPLNDRWGELSCVHWMILNAKENNIGNAQYRRNWLEPEDQWYCPETLYVPEPAQFSCTLEQQFYGGHSAFDAPVITRKLADEGKWIFTREEIDKIWAQSSFIGCNMARGPRQAYLRFMTTLFAGLAPIWREHKEHFLSIEGYDKRAIAFIAERLITGMVLCRDRIFPGVKIATAPIGFIN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |