NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255147_1000079

Scaffold Ga0255147_1000079


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42517
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (57.33%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F002317Metagenome / Metatranscriptome571Y
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F006109Metagenome381Y
F006785Metagenome / Metatranscriptome364Y
F007971Metagenome / Metatranscriptome341Y
F014614Metagenome / Metatranscriptome261Y
F017122Metagenome / Metatranscriptome242Y
F021513Metagenome / Metatranscriptome218Y
F022190Metagenome / Metatranscriptome215Y
F043896Metagenome / Metatranscriptome155Y
F073486Metagenome120Y
F101044Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100007927F073486AGGMAHTFHWTGTHVDGSRACAVVRYSGPTAGGRGSRWLATIKRDADTTWRGSATFEEGPITAALRAAGKAGVEWQALTCHSIDADTYAVGF
Ga0255147_100007930F006785AGGAGVSGGEWTTKGRQREAREAEREALRLSKRHLRDLRWAVERSSIEASDWADLLALQQAHGKEGPLQLWRELVPYWRDCQRVNGGADIPADSFPQVPGLLTRSAPAARIKASPGAARKVRSNKGKAQPSRKRSS
Ga0255147_100007935F001841GGAMGQFTPPNFFLGLMRVAAWVFWRDPVKSEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWFRKGMAYEVEEYQIEESDDAPKQFTYIVGTALRQGADVCVLTQYEPEALGVQQ
Ga0255147_100007943F101044GGAGMTMSELSPAARAIVEAFEERYERLGPLEGNWQEVCLAAALTALAVRIKGADDIRQDVLDIVNELEQFNG
Ga0255147_100007950F022190AGGAGGVSQVLDIEELRFEGDHLVVDAVVDEMVVVIPQSHLYPAEWGPALCRGTLYFSDEDLIPATDAELRAMLTDRVDDWAPIDTSDWND
Ga0255147_100007952F014614N/AMTDWYADYYRQSRGYNDNDLRELRSAPRKPSTQVPDVFKHRFADPAEYDAWVEERRRAYF
Ga0255147_100007954F021513N/AMSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTSDVRKPQSQSKTRKSSRKGKRGHAVLTENKVLEIKRQLAAGGKSVAKIAREFGVHSTTINCIKWNKTWKHVQVQQPAPVVVAD
Ga0255147_100007961F004722GGAGMEWLMREIRMAKTADLQRAAAFLEWARGIRKGCAKQRGGARVAQSNAWRKRVDEDVRW
Ga0255147_100007963F006109N/AMTRYVVMAGDRWVTAVYGPGNGIGLTAAKEDASSWITYERAVIAARAVAQCTNSPVAIHSVEEPAYPRSWK
Ga0255147_100007964F017122N/AMEVVPFQQQTDPELKLGEGRSRTSAPVAQLFELKIWLPGQGAMRDLIRAESLQQAITFATNRYPNCKVEVPEPAAKKPRLVRSSRGPKERARQNLKLVEAKREQSENR
Ga0255147_100007965F043896GAGGVSSPKIADWARQCWGEVIVDQSRVDLLEKLYQWDGRFNPEHPFHHTYTGLYQKYTEN
Ga0255147_100007966F003805AGGMRPIEHTPESSFHKAAQDRWLVDLFNKQDYRGLLEAALVLNTLHQLEKTKTAWAIREAADNLANQFGLDRDSA
Ga0255147_100007970F002867N/AMSVTNSTDFGNGFYLDQLENERGELYYRACKNSICRYAEDHYIAMMYLEGMGWDPRS
Ga0255147_100007971F002317N/AMEHHEEAVITAKPPENPFNQVVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMRVGYNK
Ga0255147_100007972F007971N/AMAVRSKTGTARIEHQSGPPKTTRQGFGQNSRPRRRGKKKLVGQGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.