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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1000169 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26470 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (94.92%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001629 | Metagenome | 660 | Y |
| F004231 | Metagenome | 447 | Y |
| F015570 | Metagenome | 253 | Y |
| F020664 | Metagenome | 222 | Y |
| F024504 | Metagenome | 205 | N |
| F029673 | Metagenome | 187 | N |
| F032957 | Metagenome | 178 | Y |
| F063332 | Metagenome | 129 | Y |
| F079808 | Metagenome | 115 | N |
| F079815 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_100016913 | F079815 | GGA | MNDYSTILMRIEQSVKSLDKKCMNKSYDGFVLDINRINNDLVMLAHWIGEQQIKQSQQNR |
| Ga0255147_100016914 | F032957 | AGGAGG | MDNELMGTTRMFPRTLETAFPKQYVNEGVFEGPYYSAPHIGDVPVLLGLIATISMIAYVVWNYL |
| Ga0255147_100016915 | F079808 | GGAGG | MKLKNELEDIYEDLWNVYFCCYCLQPQDGKLVCCHENHFVEFKYLDADCRQEIAQEVWNG |
| Ga0255147_100016916 | F024504 | AGGAG | MDRTVVGLTAPYRKSDYTYQNMLLDRIKDLEAIVKKLEQRIAQLEGKK |
| Ga0255147_100016917 | F015570 | AGG | MTKLDDAFDDLEFNVSEQIKKSTYFDEQRKVATGVTDGTAQRELVRDLTENLRAIDPEIIRNDVLEEVASEIAKLPFGDTASSFAQFVRAMKR |
| Ga0255147_100016918 | F029673 | N/A | MIQHLRMAACDEQVINGMSNAYDLGAEHERDIICTLIFNMVKDHHLAQNLVDTIRVRE |
| Ga0255147_100016919 | F004231 | AGGAG | MCVKPSDFKHEICVYLEGIGECLVCFDILSPGEELDPDHADDYEIDFAVFDEDGKHITYDLERKQYNFCENKAMDEMRDITTQWKKEWEESFD |
| Ga0255147_100016920 | F001629 | AGGAG | MILNQGKVAGGLIDDLLETVHKYDETLYMATVIGCLELVKQQLITESMENDDGT |
| Ga0255147_100016930 | F020664 | GGCGG | MEKQETKFNLIRFSPAEREIMRTIGGGNISEGARICVMWGAHFWNLGLNTEMNLQHIGLVTVSSTDNYPHE |
| Ga0255147_100016933 | F063332 | GGAG | MRKTTELDQIKAFVRGLIEGIKDTHRGEDADFYLEDYWNSWDDTLDINIWIDESDPQKYICTLYRVVDGERDDETFQRLDYLLGDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |