NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1001924

Scaffold Ga0255147_1001924


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1001924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5072
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F006109Metagenome381Y
F017122Metagenome / Metatranscriptome242Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10019243F003805GAGGMRPIEHTAESSFHKAATDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGLDRDSA
Ga0255147_10019244F043896GGAGMSNPELADWARQNWGQVIVDHARMDLLEKLYEWDGRSNPEHPNHHTYTGLYQKYNQR
Ga0255147_10019245F017122N/AMEVVPFQQQTDPELRLGEGRSRTSAEKTSLFELKIWLPGQGAMRDLVRAESLQQAITFATNRYPNCKIEVPETAAKKPKLVRSNNGPKESARRRLKLVESKNEQS
Ga0255147_10019246F006109N/AMTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAIAAARTVAECTNSAVAVHSIDEPAYPRSWK
Ga0255147_10019248F004722N/AMSRSRTGRELVMEWLMREIRQAKTADLHRAAAFLEWARGIRKGCTKQRSSARAAQSNAWRKDVDDDVRWRV
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