NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1002255

Scaffold Ga0255147_1002255


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1002255 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4693
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027496Metagenome / Metatranscriptome194N
F039106Metagenome / Metatranscriptome164N
F099211Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10022551F099211AGGAMYPDDEFLPDEAFDYTKGEYEDMHEDHNINDVLNRFVRLCQEYGFYFMMRQLTKALNAKGFNV
Ga0255147_10022553F027496GAGGMTKEMLDELLYLIELQIKANIAIALGHADAADKEAEKEHVQYYRLVSLIDSTKDDLK
Ga0255147_10022555F039106AGGAMIQLYFNGKPCEIVSRDSADGTVCIRYAADHPNWPFPNYTWVNPSVLSKLRQSKHAKRLEALQGVEDAPM
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