NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1002632

Scaffold Ga0255147_1002632


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1002632 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4323
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037206Metagenome168Y
F044373Metagenome / Metatranscriptome154Y
F081291Metagenome / Metatranscriptome114Y
F102853Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10026325F102853GGAGGMKELVYIYYAMIIIATLGFLVFFVDEPHRPTAAECGIAEISPDMSPQDRAVCRQLRRHRM
Ga0255147_10026326F044373AGGAGGMLRDGNFIREEPPKIGAHYVPEFYAKPATPEERFVQDIMLGAKPHHESPLTKFFGRLLSV
Ga0255147_10026327F037206AGCAGMKCQHCGSRTFVVNTNQQPGGIRRQRRCDSCKISAYTAEVWIAGNVMVGKSIYTNQEAALIKKKGVDARRANEDRRKKDAS
Ga0255147_10026329F081291GGAGGMKRLQYWMAKLRAAQAEERARRRELNQMQRAFERALEDVTKIEQRINHEKAKLARPK
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