NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1002803

Scaffold Ga0255147_1002803


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1002803 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4168
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F005745Metagenome / Metatranscriptome391Y
F041724Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100280310F005745AGGAGMQTQADQLNERLQKLVNLGVPGIDIIHGELKILMLEAEQELTLAQEREDETEEAMDSMERKYWEGQLDALAHVYSLTYDISFAEGLIRENRKDGH
Ga0255147_10028032F000311GGAMYFELTAPDRLSMEMAYWDAQIVGLDPVAIGPLTFNIGTGSIEKVSRIRDKFNLKETYVSDYEPTGYMRR
Ga0255147_10028035F000450GAGGVGDRANFGFVQPNGNTIVLYGHWAGYQMLGKLADAVIAARPRWNDPAYATRIAISQIIKDDWNAETGFGLHVNEISDNEHKIAIIDWEQQTFSLHEEDDRRNAVNKVRGMKNEALFTMDLSTFCEKYALEGMLVN
Ga0255147_10028037F041724AGGCGGMANRLELNDRGSFLDDENQMVIDAVITEISEHLFEQWNSSNLDEGTFYADYQIALMSSDPYLQSKFNLFYELTPEDEEYFNVGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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