NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247667_1025239

Scaffold Ga0247667_1025239


Overview

Basic Information
Taxon OID3300024290 Open in IMG/M
Scaffold IDGa0247667_1025239 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068183Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0247667_10252392F068183N/AYELDLTPGSDLAWPNMIRLSPAPPGTIRWLDVAMPYRQAIRVDLCSSEPAPAGDATRASDTTLSPGEHLLVMLAERLLTGTPEFPRRGLLAAPPTSPRQVVAGGFGVIIAALEAAGVLSPLSPVPARLATLCASLDLTGHGIAAPPTLDMPEPWLSLLAHYQRRKPEPTQMREGYAALAASLPELDGIRVILLGLQHTQGGSALHVLVQGQIPEPRPGPLDIDLNFPLSLWLKDSGGRWHAARPDRCHQAGQESAIRLRLVPPLTRPADRVEVLAGGRSAEVRATLPLRWRYLS
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