NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228660_1041108

Scaffold Ga0228660_1041108


Overview

Basic Information
Taxon OID3300024291 Open in IMG/M
Scaffold IDGa0228660_1041108 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 74D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026278Metagenome / Metatranscriptome198Y
F027898Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0228660_10411081F027898N/AMKKILLLLISVFFTLSVSGQNDPAEINYSPVNTVTKVGDTLVMKFQYNKQDGGDLTLAQFDFEYNNKLLSYISSTSQAPTGASYARNNWTGYKFNPKSNSDEDDMDVQYVWWKDEAGNASYSTSADWSVERTTIQTSAAYEDGGEFVKYSFKIKDKFGSGYDNYNNIIKVNWANYQKADGTKIQTIKSPSTQSLSGIEGGNAGAFTIN
Ga0228660_10411082F026278N/ARLVFFDIKNIGTSVAVFHKDVSLTQIIAIGELEVKGKVKKRTTQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL
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